Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Gata1

Cell type

Cell type Class
Blood
Cell type
G1E
Tissue
Blood
Lineage
cellLine
Description
Gata1- erythroid progenitor

Attributes by original data submitter

Sample

source_name
G1E cells
cell line
G1E cells
genotype
G1EWT
treatment
β-estrodiol induction
chip antibody
GATA-1(N6, Santa Cruz)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were clarified from sonicated nuclei and histone-DNA complexes were isolated with antibody. Libraries were prepared according to Illumina's instructions

Sequencing Platform

instrument_model
NextSeq 500

mm10

Number of total reads
52927034
Reads aligned (%)
95.6
Duplicates removed (%)
19.1
Number of peaks
5495 (qval < 1E-05)

mm9

Number of total reads
52927034
Reads aligned (%)
95.5
Duplicates removed (%)
19.4
Number of peaks
5507 (qval < 1E-05)

Base call quality data from DBCLS SRA